Last updated: 2021-07-10

Checks: 2 0

Knit directory: workflowr_test/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 3faf79a. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/first-analysis.nb.html

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd 3faf79a Christina Fitzsimmons 2021-07-10 feat: sample index update
html 834a0f1 Christina Fitzsimmons 2021-04-26 Build site.
Rmd 632347f Christina Fitzsimmons 2021-04-26 updating index
html 632347f Christina Fitzsimmons 2021-04-26 updating index
html 72ba928 Christina Fitzsimmons 2021-04-26 Build site.
Rmd ea8b3da Christina Fitzsimmons 2021-04-26 wflow_publish(c(“analysis/index.Rmd”))
html 9e8d67f Christina Fitzsimmons 2021-04-26 Build site.
html 841044b Christina Fitzsimmons 2021-04-26 Build site.
html d175191 Christina Fitzsimmons 2021-04-26 Build site.
html 4d2f972 Christina Fitzsimmons 2021-04-26 wflow_git_commit(all = TRUE)
Rmd c23b5af FitzsimmonsCM 2021-02-21 Start workflowr project.

Welcome! This is a test website for workflowr

Setting up dummy analysis:

  • Click on this link mtcars to see mock analysis results.

Introduction

1.1 Import Data

1.1 Pre-process Data

RNAseq

Library Prep

Sequencing

Post-processing

Data analysis

m6A-IP

Nanopore

SLAMseq / BRIC-seq

Ribo-seq